2007-12-07 22:10 warnes * [r1231] man/estimable.Rd: Correct minor typos in man page for estimable() 2007-12-07 22:09 warnes * [r1230] R/estimable.R: Add support for lme models to estimable() 2007-12-07 22:07 warnes * [r1229] man/estimable.Rd: Replace non-ascii characters in Soren's name with (equivalent?) ascii character to avoid character encoding issues. 2007-10-22 02:24 warnes * [r1196] branches/GenerateFORMATSfromFactorObjects/SASxport/DESCRIPTION, trunk/MSOfficeUtil/DESCRIPTION, trunk/RMCMC/DESCRIPTION, trunk/Rlsf/DESCRIPTION, trunk/SASxport/DESCRIPTION, trunk/bwRF/DESCRIPTION, trunk/exp.ssize/DESCRIPTION, trunk/fork/DESCRIPTION, trunk/gdata/DESCRIPTION, DESCRIPTION, trunk/gplots/DESCRIPTION, trunk/gregmisc/DESCRIPTION, trunk/ssize/DESCRIPTION: Clarify GPL version 2007-07-26 00:20 warnes * [r1105] DESCRIPTION, NAMESPACE, NEWS, R/estimable.mlm.R, man/estimable.Rd: Add support for mlm to estimable(). 2007-07-26 00:10 warnes * [r1104] R/estimable.R, R/estimable.mlm.R: Add estimable method for mlm objects 2007-03-09 22:35 warnes * [r1079] R/ci.R: Remove stray character 2007-03-09 20:10 warnes * [r1078] NEWS: Update NEWS file. 2007-03-09 20:07 warnes * [r1077] DESCRIPTION: Update version number 2007-03-09 20:06 warnes * [r1076] R/ci.R: Minor code formatting changes 2007-03-09 20:06 warnes * [r1075] R/est.lmer.R, man/ci.Rd: Flip lower and upper interval in ci.lmer(). Add example to man page. 2007-03-09 19:43 warnes * [r1074] man/ci.Rd, man/estimable.Rd: Fix some old email addressses that got missed 2006-11-29 00:11 warnes * [r1029] NEWS: Update for 2.13.1 2006-11-29 00:05 warnes * [r1028] NAMESPACE: Correct declartion of S3 methods for estimable() 2006-11-29 00:05 warnes * [r1027] DESCRIPTION: Add additional suggested packages 2006-11-29 00:04 warnes * [r1026] R/estimable.R, man/estimable.Rd: - Add generic - Fix code vs. doc inconsistiencies 2006-11-28 22:38 warnes * [r1025] R/ci.R, R/estimable.R, R/fast.prcomp.R: Remove extraneous comma that causes errors in R 2.5.0 2006-11-27 20:45 warnes * [r1016] DESCRIPTION, NEWS: Update for 2.13.1 2006-11-27 20:36 warnes * [r1015] DESCRIPTION, NAMESPACE: Add missing export of methods for estimable() 2006-11-14 22:25 ggorjan * [r1012] trunk/gdata/man/combine.Rd, trunk/gdata/man/frameApply.Rd, R/ci.R, R/fast.prcomp.R, man/ci.Rd, trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/lowess.R, trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R, trunk/gplots/R/wapply.R, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gtools/R/combinations.R, trunk/gtools/R/running.R, trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd: Removed executable property 2006-08-02 22:21 warnes * [r977] trunk/BalloonPlotPaper/BalloonPlot.pdf, trunk/BalloonPlotPaper/BalloonPlot.tex, trunk/MSOfficeUtil/DESCRIPTION, trunk/PathwayModeling/thesispaper/slides.tex, trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd, trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd, trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd, trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd, trunk/exp.ssize/inst/doc/ssize.pdf, trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION, trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd, trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd, trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd, trunk/gdata/inst/doc/gregmisc.tex, trunk/gdata/man/ConvertMedUnits.Rd, trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd, trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd, trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd, trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd, trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd, trunk/gdata/man/upperTriangle.Rd, man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd, trunk/gplots/inst/doc/BalloonPlot.pdf, trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd, trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd, trunk/gplots/man/overplot.Rd, trunk/gplots/man/plot.lm2.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd, trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION, trunk/gregmisc/gregmisc/DESCRIPTION.standalone, trunk/gregmisc/inst/doc/gregmisc.tex, trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd, trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd, trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd, trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION, trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION, trunk/ssize/man/pow.Rd: Update my email address 2006-06-06 19:17 nj7w * [r966] man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Updated ci, estimable and fit.contrast as per Randall Johnson 2006-06-05 21:00 nj7w * [r965] DESCRIPTION: Additions as per Randall C Johnson 2006-06-05 20:59 nj7w * [r964] R/ci.R, R/estimable.R, R/fit.contrast.R, R/to.est.R: Additions as per Randall C Johnson 2006-06-05 20:57 nj7w * [r963] R/est.lmer.R: - New function to estimate CI's and p-values using mcmcsamp() from the Matrix package 2006-05-05 18:29 nj7w * [r959] R/CrossTable.R, man/CrossTable.Rd: Fixed an error: According to Marc Schwartz - there was an error when a matrix without dimnames(or names(dimnames)) was passed as x argument 2005-12-13 16:03 nj7w * [r808] ChangeLog: Removed ChangeLog 2005-12-13 16:02 nj7w * [r807] NEWS: Updated NEWS 2005-12-12 21:57 nj7w * [r796] DESCRIPTION: Updated version number for CRAN 2005-12-04 06:27 warnes * [r781] NEWS: Update for 2.11.0 2005-12-04 06:12 warnes * [r780] DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R, R/fit.contrast.R, R/to.est.R, man/ci.Rd, man/estimable.Rd: Integration of code changes suggested by Randall C Johnson to add support for lmer (lme version 4) objects to ci(), estimable(), and fit.contrast(). Addition of simplified coefficient specificaiton for estimable() based on a function provided by Randall C Johnson. It is now possible to do things like: estimable(reg, c("xB"=1,"xD"=-1) ) instead of: estimable(reg, c( 0, 1, 0, -1) ) which should make estimable much easier to use for large models. 2005-12-01 16:54 nj7w * [r776] man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd, man/fit.contrast.Rd, man/make.contrasts.Rd, trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd, trunk/gplots/man/overplot.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd, trunk/gtools/man/combinations.Rd, trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd, trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd: Updated Greg's email address 2005-10-27 11:21 warnes * [r709] DESCRIPTION: Update version number. Bump minor version since we added functionality. 2005-10-27 10:33 warnes * [r708] DESCRIPTION, NAMESPACE: Add ci.binom() to NAMESPACE, bump version 2005-10-26 13:39 warnes * [r707] R/ci.R, man/ci.Rd: Add ci.binom 2005-10-25 21:18 warnes * [r706] NAMESPACE: Add gdata::nobs to import list. Needed by ci() 2005-09-12 15:44 nj7w * [r671] trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd, trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd, trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd, man/fast.prcomp.Rd, man/glh.test.Rd, trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd, trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd, trunk/gtools/man/assert.Rd, trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/permute.Rd, trunk/gtools/man/scat.Rd: Updated Greg's email 2005-09-07 15:31 nj7w * [r667] man/CrossTable.Rd: Fixed man page 2005-09-06 21:34 nj7w * [r664] DESCRIPTION: Updated DESCRIPTION 2005-09-06 21:34 nj7w * [r663] NEWS: Added NEWS 2005-09-06 16:21 nj7w * [r662] DESCRIPTION: Fixed the Package name 2005-09-02 23:10 nj7w * [r655] ChangeLog, trunk/gplots/ChangeLog: Added ChangeLog 2005-08-31 16:28 nj7w * [r644] trunk/gdata/DESCRIPTION, DESCRIPTION, trunk/gplots/DESCRIPTION: Added DESCRIPTION file 2005-08-31 16:27 nj7w * [r643] trunk/gdata/DESCRIPTION.in, DESCRIPTION.in, trunk/gplots/DESCRIPTION.in: removed DESCRIPTION.in 2005-07-11 21:35 nj7w * [r627] R/CrossTable.R, man/CrossTable.Rd: Revision based on Marc Schwartz's suggestions: 1) Added 'dnn' argument to enable specification of dimnames as per table() 2) Corrected bug in SPSS output for 1d table, where proportions were being printed and not percentages ('%' output) 2005-06-09 14:20 nj7w * [r625] trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R, trunk/gdata/R/elem.R, trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R, trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R, trunk/gdata/R/ll.R, trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R, trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R, trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R, trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm, trunk/gdata/inst/perl/IO/InnerFile.pm, trunk/gdata/inst/perl/IO/Lines.pm, trunk/gdata/inst/perl/IO/Scalar.pm, trunk/gdata/inst/perl/IO/Scalar.pm.html, trunk/gdata/inst/perl/IO/ScalarArray.pm, trunk/gdata/inst/perl/IO/Stringy.pm, trunk/gdata/inst/perl/IO/Wrap.pm, trunk/gdata/inst/perl/IO/WrapTie.pm, trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd, trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd, R/ci.R, R/coefFrame.R, R/estimable.R, R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R, man/CrossTable.Rd, man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd, man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd, trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R, trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R, trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R, trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R, trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R, trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R, trunk/gplots/R/space.R, trunk/gplots/R/textplot.R, trunk/gplots/R/wapply.R, trunk/gplots/man/1, trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd, trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd, trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd, trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R, trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R, trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R, trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R, trunk/gtools/R/running.R, trunk/gtools/R/scat.R, trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd, trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating the version number, and various help files to synchronize splitting of gregmisc bundle in 4 individual components. 2005-06-09 14:13 nj7w * [r623] R/CrossTable.R: Updates by Marc Schwartz: CrossTable: # Revision 2.0 2005/04/27 # Added 'format = "d"' to all table count output # so that large integers do not print in # scientific notation 2005-05-13 18:59 nj7w * [r621] trunk/gdata/R/read.xls.R, man/CrossTable.Rd, trunk/gplots/man/heatmap.2.Rd: 1) Using dQuote.ascii function in read.xls as the new version of dQuote doesn't work proprly with UTF-8 locale. 2) Modified CrossTable.Rd usage in gmodels 3) Modified heatmap.2 usage in gplots. 2005-05-11 13:51 warnes * [r620] DESCRIPTION.in, NAMESPACE, trunk/gregmisc/DESCRIPTION: Add dependency on gdata::frameApply. 2005-03-31 20:32 warnes * [r593] NAMESPACE: Add ceofFrame function to NAMESPACE 2005-03-31 19:05 warnes * [r592] man/coefFrame.Rd: coefFrame example needs to properly load ELISA data from gtools package 2005-03-31 18:31 warnes * [r588] R/CrossTable.R, man/CrossTable.Rd, man/ci.Rd, man/estimable.Rd, man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd: Ensure that each file has $Id$ header, and no $Log$ 2005-03-31 18:30 warnes * [r587] R/coefFrame.R, man/coefFrame.Rd: Add coefFrame() function contributed by Jim Rogers 2005-01-18 19:53 warnes * [r521] R/CrossTable.R: Removed Windows Line Endings 2005-01-14 21:40 nj7w * [r518] man/CrossTable.Rd: Updated the manual to reflect prop.chisq change in its R file. 2005-01-14 19:14 warnes * [r517] R/CrossTable.R: Nitin added display of the Chisquare contribution of each cell, as suggested by Greg Snow. 2005-01-12 20:50 warnes * [r515] trunk/gdata/DESCRIPTION.in, DESCRIPTION.in, trunk/gplots/DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent poeple from installing on old versions of R which don't support namespaces. 2004-12-23 19:32 nj7w * [r507] R/CrossTable.R, man/CrossTable.Rd: Split the function print.CrossTable.vector in two parts - for SAS behaiour and SPSS behaviour. Also put the code of printing statistics in a function 'print.statistics' 2004-12-21 22:38 warnes * [r502] R/CrossTable.R: Added & extended changes made by Nitin to implement 'SPSS' format, as suggested by Dirk Enzmann . 2004-09-30 21:03 warneg * [r464] man/glh.test.Rd: Fix typos. 2004-09-27 21:01 warneg * [r461] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in, trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory, DESCRIPTION, DESCRIPTION.in, trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in, trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd, trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION, trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in, trunk/gtools/man/running.Rd: Updated to pass R CMD check. 2004-09-03 22:44 warneg * [r450] man/fit.contrast.Rd: Add explicit package to call to quantcut in example. 2004-09-03 17:27 warneg * [r446] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in, trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R, trunk/gdata/R/elem.R, trunk/gdata/R/env.R, trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R, trunk/gdata/R/ll.R, trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R, trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R, trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R, trunk/gdata/man/reorder.Rd, DESCRIPTION, NAMESPACE, R/CrossTable.R, R/ci.R, R/estimable.R, R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R, man/estimable.Rd, man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd, trunk/gplots/DESCRIPTION, trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R, trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R, trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R, trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R, trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R, trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R, trunk/gplots/R/space.R, trunk/gplots/R/textplot.R, trunk/gplots/R/wapply.R, trunk/gtools/DESCRIPTION, trunk/gtools/NAMESPACE, trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R, trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R, trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R, trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: initial bundle checkin 2004-09-02 17:14 warneg * [r442] trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in, trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory, DESCRIPTION, DESCRIPTION.in, NAMESPACE, trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE, trunk/gplots/man/1, trunk/gplots/man/residplot.Rd, trunk/gregmisc/.Rhistory, trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in, trunk/gtools/NAMESPACE: Initial revision 2004-05-25 02:57 warnes * [r327] R/CrossTable.R, man/CrossTable.Rd: Updates from Mark Schwartz. 2004-04-13 11:41 warnes * [r314] man/estimable.Rd: Fix latex warning: it doesn't like double subscripts. 2004-03-26 22:28 warnes * [r306] man/fast.prcomp.Rd: Reflect movement of code from 'mva' package to 'stats' in R 1.9.0. 2004-03-25 20:09 warnes * [r296] R/estimable.R, man/estimable.Rd: - Estimable was reporting sqrt(X^2) rather than X^2 in the output. - Provide latex math markup for linear algebra expressions in help text. - Other clarifications in help text 2004-03-25 18:17 warnes * [r295] R/estimable.R, man/estimable.Rd: Add enhancements to estimable() provided by S�ren H�jsgaard \email{sorenh@agrsci.dk}: I have made a modified version of the function [..] which 1) also works on geese and gee objects and 2) can test hypotheses af the forb L * beta = beta0 both as a single Wald test and row-wise for each row in L. 2003-11-17 21:40 warnes * [r221] R/fit.contrast.R: - Fix incorrect handling of glm objects by fit.contrast, as reported by Ulrich Halekoh, Phd . - Add regression test code to for this bug. 2003-08-07 03:49 warnes * [r217] R/ci.R: - Fixed incorrect denominator in standard error for mean in ci.default. 2003-04-22 17:24 warnes * [r190] R/fit.contrast.R: - the variable 'df' was used within the lme code section overwriting the argument 'df'. 2003-03-12 17:58 warnes * [r173] man/fit.contrast.Rd: - Fixed a typo in the example - Added to lme example 2003-03-07 15:48 warnes * [r168] R/fast.prcomp.R, trunk/gplots/R/hist2d.R, trunk/gplots/R/qqnorm.aov.R, trunk/gregmisc/DESCRIPTION, trunk/gtools/R/RSCompat.S: - Minor changes to code to allow the package to be provided as an S-Plus chapter. 2003-01-30 21:53 warnes * [r160] R/fit.contrast.R, man/fit.contrast.Rd: - Renamed 'contrast.lm' to 'fit.contrast'. This new name is more descriptive and makes it easier to create and use methods for other classes, eg lme. - Enabled fit.contrast for lme object now that Doug Bates has provided the necessary support for contrasts in the nlme package. - New contrast.lm function which generates a 'depreciated' warning and calls fit.contrast - Updated help text to match changes. 2003-01-30 21:41 warnes * [r158] R/CrossTable.R, man/CrossTable.Rd: - Removed argument 'correct' and now print separate corrected values for 2 x 2 tables. - Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle printing of row, col and table percentages. Default is TRUE. - Added argument 'fisher' to toggle fisher exact test. Default is FALSE. - Added McNemar test to statistics and argument 'mcnemar' to toggle test. Default is FALSE. - Added code to generate an invisible return list containing table counts, proportions and the results of the appropriate statistical tests. 2003-01-30 14:58 warnes * [r157] R/make.contrasts.R: - Added explicit check to ensure that the number of specified contrasts is less than or equal to the ncol - 1. Previously, this failed with an obtuse error message when the contrast matrix had row names, and silently dropped contrasts over ncol-1. 2002-11-04 14:13 warnes * [r142] R/CrossTable.R: - Moved fisher.test() to after table is printed, so that table is still printed in the event that fisher.test() results in errors. 2002-10-29 23:06 warnes * [r138] R/fast.prcomp.R, man/fast.prcomp.Rd: - Fixes to fast.svd to make it actually work. - Updates to man page to fix mistmatches between code and docs and to fix warnings. 2002-10-29 23:00 warnes * [r137] R/make.contrasts.R, man/make.contrasts.Rd: - Moved make.contrasts to a separate file. - Enhanced make contrasts to better label contrast matrix, to give how.many a default value, and to coerce vectors into row matrixes. - Added help page for make.contrasts. - Added link from contrasts.lm seealso to make.contrasts. 2002-10-29 19:29 warnes * [r136] R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for fast.prcomp() and fast.svd(). 2002-09-26 12:11 warnes * [r127] man/glh.test.Rd: - Added note and example code to illustrate how to properly compute contrasts for the first factor in the model. 2002-09-24 19:12 warnes * [r124] R/glh.test.R: - Fixed a typo. 2002-09-23 14:27 warnes * [r119] man/CrossTable.Rd, man/glh.test.Rd, trunk/gplots/man/barplot2.Rd: - Fixed syntax errors in barplot2.Rd and CrossTable.Rd - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in glh.test.Rd 2002-09-23 13:59 warnes * [r117] trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R, trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R, trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd, trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd, R/ci.R, man/estimable.Rd, man/glh.test.Rd, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R, trunk/gplots/R/lowess.R, trunk/gplots/R/residplot.R, trunk/gplots/man/bandplot.Rd, trunk/gplots/man/hist2d.Rd, trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/space.Rd, trunk/gtools/man/combinations.Rd, trunk/gtools/man/quantcut.Rd: - Modified all files to include CVS Id and Log tags. 2002-09-23 13:38 warnes * [r116] R/CrossTable.R, man/CrossTable.Rd, trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd, trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R: - Added CrossTable() and barplot2() code and docs contributed by Marc Schwartz. - Permit combinations() to be used when r>n provided repeat.allowed=TRUE - Bumped up version number 2002-08-01 19:37 warnes * [r114] R/ci.R, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd, trunk/gplots/R/hist2d.R, trunk/gplots/R/wapply.R, trunk/gregmisc/DESCRIPTION, trunk/gtools/R/running.R: - Corrected documentation mismatch for ci, ci.default. - Replaced all occurences of '_' for assignment with '<-'. - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE' with the spelled out version. - Updaded version number and date. 2002-04-09 00:51 warneg * [r109] trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd, R/ci.R, R/estimable.R, R/glh.test.R, man/glh.test.Rd, trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R, trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R, trunk/gplots/R/space.R, trunk/gplots/R/wapply.R, trunk/gplots/man/bandplot.Rd, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R, trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd: Checkin for version 0.5.3 2002-03-26 21:22 warneg * [r104] trunk/gdata/man/reorder.Rd, R/ci.R, R/glh.test.R, man/ci.Rd, man/glh.test.Rd, trunk/gplots/R/lowess.R, trunk/gplots/man/lowess.Rd: - Changed methods to include '...' to match the generic. - Updated for version 0.5.1 2002-03-26 15:30 warneg * [r99] man/glh.test.Rd: Removed incorrect link to 'contrast' from seealso. 2002-02-20 20:09 warneg * [r81] trunk/gdata/man/rename.vars.Rd, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd, trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/space.Rd: Minor changes, typo and formatting fixes. 2002-01-17 23:51 warneg * [r70] man/estimable.Rd: - Fixed errror in last example by adding 'conf.int' parameter to 'estimable' call. 2002-01-17 23:42 warneg * [r69] R/glh.test.R: - Fixed typo in code that resulted in an syntax error. 2002-01-10 17:35 warneg * [r68] R/glh.test.R: - print.glh.test() was using cat() to printing the call. This didn't work and generated an error. 2001-12-19 20:06 warneg * [r66] man/glh.test.Rd: - Fixed display of formulae. - Added description of return value 2001-12-19 20:05 warneg * [r65] R/glh.test.R: - Removed extra element of return object. 2001-12-18 22:14 warneg * [r64] man/estimable.Rd: - Updated documentation to reflect change of parameters from 'alpha' to 'conf.int', including the new optional status of the confidence intervals. 2001-12-18 22:12 warneg * [r63] R/estimable.R: - Modified to make confidence intervals optional. Changed 'alpha' parameter giving significance level to 'conf.int' giving confidence level. 2001-12-18 21:36 warneg * [r62] man/glh.test.Rd: - Added summary.glh.test to alias, usage, and example sections. 2001-12-18 21:34 warneg * [r61] R/glh.test.R: - Modified to work correctly when obj is of class 'aov' by specifying summary.lm instead of summary. This ensures that the summary object has the fields we need. - Moved detailed reporting of results from 'print' to 'summary' function and added a simpler report to 'print' 2001-12-18 21:27 warneg * [r60] R/estimable.R: - Modified to work correctly when obj is of class 'aov' by specifying summary.lm instead of summary. This ensures that the summary object has the fields we need. 2001-12-18 00:45 warneg * [r59] R/glh.test.R, man/glh.test.Rd: Initial checkin. 2001-12-17 18:59 warneg * [r56] man/estimable.Rd: - Fixed spelling errors. 2001-12-17 18:52 warneg * [r55] man/estimable.Rd: - Fixed the link to contrasts.lm. - Rephrased title/description to be more clear. 2001-12-10 19:35 warneg * [r49] man/estimable.Rd: Renamed 'contrsts.coeff.Rd' to 'estimable.Rd' corresponding to function rename. 2001-12-10 19:26 warneg * [r48] R/estimable.R: renamed from contrast.coeff.R to estimable.R (incorrectly via contrast.lm.R) 2001-12-07 19:50 warneg * [r37] man/ci.Rd: - Added text noting that lme is now supported. 2001-12-07 19:19 warneg * [r36] R/ci.R: - Fixed typo: DF column was being filled in with p-value. 2001-12-07 18:49 warneg * [r35] R/ci.R: - Added ci.lme method to handle lme objects. 2001-10-16 23:15 warneg * [r27] man/ci.Rd, trunk/gplots/man/wapply.Rd: Fixed unbalanced brace. 2001-08-25 05:52 warneg * [r12] man/ci.Rd: - Added CVS header. - Added my email address. 2001-05-30 13:23 warneg * [r2] ., R, R/ci.R, man, man/ci.Rd, trunk/gplots, trunk/gplots/R, trunk/gplots/R/boxplot.n.R, trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R, trunk/gplots/man, trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd, trunk/gregmisc, trunk/gregmisc/DESCRIPTION: Initial revision