SubpathwayMiner is an R-based software for flexible pathway identification. (1) SubpathwayMiner can provide users with sub-pathway annotation and identification of metabolic pathways based on enzyme commission (EC) numbers. (2) SubpathwayMiner can provide users with sub-pathway annotation and identification based on KEGG Orthology (KO) identifiers. (new!) (3) SubpathwayMiner can provide annotation and identification of entire pathways. (4) SubpathwayMiner can support most of organisms in the KEGG GENE database. (5) Data can be automatically updated on demand by the user.
| Version: | 2.0 |
| Depends: | R (≥ 2.8.0), RBGL(≥ 1.18.0), fdrtool(≥ 1.2.4) |
| Suggests: | Rgraphviz(≥ 1.20.3), XML(≥ 1.94) |
| Published: | 2009-09-03 |
| Author: | Chunquan Li |
| Maintainer: | Chunquan Li <lcqbio at yahoo.com.cn> |
| License: | GPL (≥ 2) |
| CRAN checks: | SubpathwayMiner results |
| Package source: | SubpathwayMiner_2.0.tar.gz |
| MacOS X binary: | SubpathwayMiner_2.0.tgz |
| Windows binary: | SubpathwayMiner_2.0.zip |
| Reference manual: | SubpathwayMiner.pdf |
| Vignettes: |
SubpathwayMiner Overview |
| Old sources: | SubpathwayMiner archive |