PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Version: 0.43.0
Depends: R (≥ 3.0.0), utils
Imports: R.methodsS3 (≥ 1.6.1), R.oo (≥ 1.18.0), R.utils (≥ 1.32.4), R.cache (≥ 0.9.0), matrixStats (≥ 0.10.0), DNAcopy (≥ 1.36.0)
Suggests: aroma.light (≥ 1.32.0), Hmisc (≥ 3.14-4), R.rsp (≥ 0.19.0), R.devices (≥ 2.9.2), ggplot2 (≥ 1.0.0)
Published: 2014-06-10
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: PSCBS citation info
Materials: NEWS
CRAN checks: PSCBS results

Downloads:

Reference manual: PSCBS.pdf
Vignettes: Total copy-number segmentation using CBS
Parent-specific copy-number segmentation using Paired PSCBS
Package source: PSCBS_0.43.0.tar.gz
Windows binaries: r-devel: PSCBS_0.43.0.zip, r-release: PSCBS_0.43.0.zip, r-oldrel: PSCBS_0.43.0.zip
OS X Snow Leopard binaries: r-release: PSCBS_0.43.0.tgz, r-oldrel: PSCBS_0.40.4.tgz
OS X Mavericks binaries: r-release: PSCBS_0.43.0.tgz
Old sources: PSCBS archive

Reverse dependencies:

Reverse imports: aroma.cn, aroma.core