CRAN Package Check Results for Package seqinr

Last updated on 2015-02-01 17:50:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1-3 3.27 42.63 45.90 NOTE
r-devel-linux-x86_64-debian-gcc 3.1-3 3.69 42.35 46.04 NOTE
r-devel-linux-x86_64-fedora-clang 3.1-3 96.37 NOTE
r-devel-linux-x86_64-fedora-gcc 3.1-3 87.03 NOTE
r-devel-osx-x86_64-clang 3.1-3 104.47 NOTE
r-devel-windows-ix86+x86_64 3.1-3 28.00 105.00 133.00 NOTE
r-patched-linux-x86_64 3.1-3 3.93 45.10 49.02 OK
r-patched-solaris-sparc 3.1-3 580.30 OK
r-patched-solaris-x86 3.1-3 120.90 OK
r-release-linux-ix86 3.1-3 4.78 58.80 63.58 OK
r-release-linux-x86_64 3.1-3 4.08 45.56 49.64 OK
r-release-osx-x86_64-mavericks 3.1-3 OK
r-release-osx-x86_64-snowleopard 3.1-3 OK
r-release-windows-ix86+x86_64 3.1-3 17.00 118.00 135.00 OK
r-oldrel-windows-ix86+x86_64 3.1-3 19.00 112.00 131.00 OK

Check Details

Version: 3.1-3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘segmented’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 3.1-3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     getAnnot.SeqAcnucWeb getAnnot.SeqFastaAA getAnnot.SeqFastadna
     getAnnot.default getAnnot.list getAnnot.logical getAnnot.qaw
     getFrag.SeqAcnucWeb getFrag.SeqFastaAA getFrag.SeqFastadna
     getFrag.SeqFrag getFrag.character getFrag.default getFrag.list
     getFrag.logical getFrag.qaw getKeyword.SeqAcnucWeb getKeyword.default
     getKeyword.list getKeyword.logical getKeyword.qaw
     getLength.SeqAcnucWeb getLength.SeqFastaAA getLength.SeqFastadna
     getLength.SeqFrag getLength.character getLength.default
     getLength.list getLength.logical getLength.qaw
     getLocation.SeqAcnucWeb getLocation.default getLocation.list
     getLocation.logical getLocation.qaw getName.SeqAcnucWeb
     getName.SeqFastaAA getName.SeqFastadna getName.SeqFrag
     getName.default getName.list getName.logical getName.qaw
     getSequence.SeqAcnucWeb getSequence.SeqFastaAA
     getSequence.SeqFastadna getSequence.SeqFrag getSequence.character
     getSequence.default getSequence.list getSequence.logical
     getSequence.qaw getTrans.SeqAcnucWeb getTrans.SeqFastadna
     getTrans.SeqFrag getTrans.character getTrans.default getTrans.list
     getTrans.logical getTrans.qaw as.matrix.alignment print.SeqAcnucWeb
     print.qaw summary.SeqFastaAA summary.SeqFastadna plot.SeqAcnucWeb
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang