CRAN Package Check Results for Package rmeta

Last updated on 2015-07-04 11:50:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.16 0.60 12.80 13.41 NOTE
r-devel-linux-x86_64-debian-gcc 2.16 0.61 11.99 12.60 NOTE
r-devel-linux-x86_64-fedora-clang 2.16 24.02 NOTE
r-devel-linux-x86_64-fedora-gcc 2.16 22.42 NOTE
r-devel-osx-x86_64-clang 2.16 22.40 NOTE
r-devel-windows-ix86+x86_64 2.16 5.00 25.00 30.00 NOTE
r-patched-linux-x86_64 2.16 0.65 12.33 12.98 NOTE
r-patched-solaris-sparc 2.16 160.80 NOTE
r-patched-solaris-x86 2.16 35.70 NOTE
r-release-linux-x86_64 2.16 0.63 12.45 13.08 NOTE
r-release-osx-x86_64-mavericks 2.16 NOTE
r-release-windows-ix86+x86_64 2.16 3.00 23.00 26.00 NOTE
r-oldrel-windows-ix86+x86_64 2.16 5.00 26.00 31.00 NOTE

Check Details

Version: 2.16
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.16
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘grid’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.16
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     funnelplot.default funnelplot.meta.DSL funnelplot.meta.MH
     funnelplot.meta.summaries plot.meta.DSL plot.meta.MH plot.meta.cum
     plot.meta.summaries print.meta.DSL print.meta.MH print.meta.cum
     print.meta.summaries print.summary.meta.DSL print.summary.meta.MH
     print.summary.meta.cum print.summary.meta.summaries summary.meta.DSL
     summary.meta.MH summary.meta.cum summary.meta.summaries
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.16
Check: R code for possible problems
Result: NOTE
    cummeta: no visible binding for global variable ‘na.fail’
    forestplot: no visible global function definition for ‘plot.new’
    funnelplot.default: no visible global function definition for ‘qnorm’
    funnelplot.default: no visible global function definition for ‘plot’
    funnelplot.default: no visible global function definition for ‘par’
    funnelplot.default: no visible global function definition for
     ‘segments’
    funnelplot.default: no visible global function definition for ‘abline’
    funnelplot.default: no visible global function definition for ‘points’
    meta.DSL: no visible binding for global variable ‘na.fail’
    meta.DSL: no visible global function definition for ‘pchisq’
    meta.MH: no visible binding for global variable ‘na.fail’
    meta.MH: no visible global function definition for ‘pchisq’
    meta.colors: no visible global function definition for ‘par’
    meta.summaries: no visible binding for global variable ‘na.fail’
    meta.summaries: no visible global function definition for ‘pchisq’
    metaplot: no visible global function definition for ‘qnorm’
    metaplot: no visible global function definition for ‘par’
    metaplot: no visible global function definition for ‘plot’
    metaplot: no visible global function definition for ‘axis’
    metaplot: no visible global function definition for ‘abline’
    metaplot: no visible global function definition for ‘lines’
    metaplot: no visible global function definition for ‘text’
    metaplot: no visible global function definition for ‘rect’
    metaplot: no visible global function definition for ‘polygon’
    plot.meta.cum: no visible global function definition for ‘title’
    plot.meta.cum: no visible global function definition for ‘abline’
    plot.meta.cum: no visible global function definition for ‘qnorm’
    print.meta.DSL: no visible global function definition for ‘qnorm’
    print.meta.MH: no visible global function definition for ‘qnorm’
    print.meta.summaries: no visible global function definition for ‘qnorm’
    summary.meta.DSL: no visible global function definition for ‘qnorm’
    summary.meta.MH: no visible global function definition for ‘qnorm’
    summary.meta.cum: no visible global function definition for ‘qnorm’
    summary.meta.summaries: no visible global function definition for
     ‘qnorm’
    Undefined global functions or variables:
     abline axis lines na.fail par pchisq plot plot.new points polygon
     qnorm rect segments text title
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.16
Check: Rd files
Result: NOTE
    prepare_Rd: meta.MH.Rd:55: Dropping empty section \references
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.16
Check: Rd line widths
Result: NOTE
    Rd file 'forestplot.Rd':
     \examples lines wider than 100 characters:
     c("","OR",format(exp(steroid$logOR),digits=2),NA,format(exp(steroid$logMH),digits=2))
    
    Rd file 'meta.cum.Rd':
     \usage lines wider than 90 characters:
     NULL, subset = NULL, na.action = na.fail, method = c("meta.MH", "meta.DSL"), statistic = "OR")
     cummeta.summaries(effects,stderrs, conf.level = 0.95, names = NULL,weights=NULL, data= NULL, subset = NULL, na.action = get(getOption(" ... [TRUNCATED]
     summary.line = TRUE, summary.conf = FALSE, main="Cumulative meta-analysis", lwd=1, ...)
     \examples lines wider than 100 characters:
     steroid<-cummeta(n.trt,n.ctrl,ev.trt,ev.ctrl,names=name,data=cochrane,statistic="RR",method="meta.MH")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.16
Check: R code for possible problems
Result: NOTE
    plot.meta.cum: warning in qnorm((1 - conf.level)/2, s = ses[m]):
     partial argument match of 's' to 'sd'
Flavors: r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64