CRAN Package Check Results for Package gRc

Last updated on 2015-03-27 12:48:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-1 4.73 44.94 49.67 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-1 4.70 42.39 47.09 NOTE
r-devel-linux-x86_64-fedora-clang 0.4-1 97.89 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-1 93.45 NOTE
r-devel-osx-x86_64-clang 0.4-1 92.44 NOTE
r-prerel-windows-ix86+x86_64 0.4-1 18.00 68.00 86.00 NOTE
r-prerel-linux-x86_64 0.4-1 4.84 41.79 46.63 NOTE
r-prerel-solaris-sparc 0.4-1 592.20 NOTE
r-prerel-solaris-x86 0.4-1 127.40 NOTE
r-release-linux-x86_64 0.4-1 6.14 55.73 61.87 NOTE
r-release-osx-x86_64-mavericks 0.4-1 NOTE
r-release-osx-x86_64-snowleopard 0.4-1 NOTE
r-release-windows-ix86+x86_64 0.4-1 19.00 95.00 114.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4-1 20.00 95.00 115.00 NOTE

Memtest notes: valgrind

Check Details

Version: 0.4-1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86

Version: 0.4-1
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘TODO.txt’ ‘Wishlist.txt’ ‘gRc-Ex.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-linux-x86_64, r-release-linux-x86_64

Version: 0.4-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘Rgraphviz’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Rgraphviz’ ‘gRbase’ ‘graph’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.4-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     K2theta.rcon K2theta.rcor add1.rcox as.cc.default as.cc.list
     coef.rcox drop1.rcox findKinModel.rcox fit.rcox formula2names.NULL
     formula2names.default formula2names.formula formula2names.list
     formula2string.default formula2string.list getIndex.character
     getIndex.default getIndex.list getScore.rcon getScore.rcor
     listOrder.atom listOrder.cc listOrder.default listOrder.list
     listOrder.numeric names2formula.default names2formula.list plot.rcox
     print.atom print.cc print.cclist print.colourClass print.rcox
     print.statTable print.summary.rcox summary.rcox theta2K.rcon
     theta2K.rcor toLisp.cc toLisp.default toLisp.list update.rcox
     vcov.rcox
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-linux-x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    .bootstrapVCOV: no visible global function definition for ‘mvrnorm’
    .buildStandardRepresentation: no visible global function definition for
     ‘unlistPrim’
    .buildStandardRepresentation: no visible global function definition for
     ‘uniquePrim’
    .buildStandardRepresentation: no visible binding for global variable
     ‘names2pairs’
    .buildStandardRepresentation : <anonymous>: no visible global function
     definition for ‘rowSumsPrim’
    .buildStandardRepresentation: no visible global function definition for
     ‘removeRedundant’
    .rconIPM: no visible global function definition for ‘ellK’
    .redundant.index: no visible global function definition for ‘subsetof’
    fitIPSedge: no visible global function definition for ‘ellK’
    fitIPSset: no visible global function definition for ‘ellK’
    fitNR: no visible global function definition for ‘uniquePrim’
    fitNR: no visible global function definition for ‘setdiffPrim’
    fitNR: no visible global function definition for ‘ellK’
    fitNR2: no visible global function definition for ‘uniquePrim’
    fitNR2: no visible global function definition for ‘setdiffPrim’
    fitNR2: no visible global function definition for ‘ellK’
    getedges: no visible global function definition for ‘names2pairs’
    rconIPM: no visible global function definition for ‘ellK’
    rconScoreMatch: no visible global function definition for ‘ellK’
    rcorIPM: no visible global function definition for ‘ellK’
    rcorScoreMatch: no visible global function definition for ‘ellK’
    rcorScoreTheta: no visible global function definition for ‘ellK’
    refitA: no visible global function definition for ‘setdiffPrim’
    scoring: no visible global function definition for ‘ellK’
    scoring: no visible global function definition for ‘unlistPrim’
    stepjoin1: no visible global function definition for ‘fit’
    update.rcox: no visible global function definition for ‘unlistPrim’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.4-1
Check: Rd line widths
Result: NOTE
    Rd file 'fitInternal.Rd':
     \usage lines wider than 90 characters:
     scoring (object, K0, control = object$control, maxit=control$maxouter, trace = object$trace)
    
    Rd file 'stepwise.Rd':
     \usage lines wider than 90 characters:
     stepjoin1 (object, scope, type = "ecc", criterion = "aic", steps = 1000, k = 2, alpha = 0.05, stat = "wald", details = 1, trace=0)
     stepsplit1(object, type = "ecc", criterion = "aic", steps = 1000, k = 2, alpha = 0.05, stat = "wald", details = 1, trace=0)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-linux-x86_64, r-release-linux-x86_64

Version: 0.4-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘Rgraphviz’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Rgraphviz’ ‘gRbase’ ‘graph’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    .bootstrapVCOV: no visible global function definition for ‘mvrnorm’
Flavors: r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64