CRAN Package Check Results for Package bcool

Last updated on 2014-09-01 08:47:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 6.22 323.46 329.68 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 5.52 320.68 326.20 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 473.42 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 455.60 NOTE
r-devel-osx-x86_64-clang 1.1 494.02 NOTE
r-patched-linux-x86_64 1.1 4.84 326.69 331.53 OK
r-patched-solaris-sparc 1.1 692.10 OK --no-vignettes
r-patched-solaris-x86 1.1 1573.10 OK
r-release-linux-ix86 1.1 5.76 604.86 610.62 OK
r-release-linux-x86_64 1.1 5.74 327.37 333.11 OK
r-release-osx-x86_64-mavericks 1.1 ERROR
r-release-osx-x86_64-snowleopard 1.1 ERROR

Check Details

Version: 1.1
Check: R code for possible problems
Result: NOTE
    MCMCglmm.APPT.list,APPT.list-formula-character-numeric-numeric-list-logical-logical:
     no visible global function definition for ‘%dopar%’
    MCMCglmm.APPT.list,APPT.list-formula-character-numeric-numeric-list-logical-logical:
     no visible global function definition for ‘foreach’
    bootMCMCglmm.APPT.list,APPT.list-formula-numeric-character-character-numeric-numeric-list-logical-logical:
     no visible global function definition for ‘%dopar%’
    bootMCMCglmm.APPT.list,APPT.list-formula-numeric-character-character-numeric-numeric-list-logical-logical:
     no visible global function definition for ‘foreach’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘doMPI’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘bcool.Snw’
     ...
    > prior <- list(R = list(V = 1, nu = 1), G = list(G1 = list(V = 1,
    + nu = 1)))
    
    > myAPPT.list <- MCMCglmm.APPT.list(myAPPT.list, ~-1 +
    + pathogenicity, random.eff = "spKEGG", nitt = 1500, burnin = 500,
    + prior, scale = F .... [TRUNCATED]
    
     When sourcing ‘bcool.R’:
    Error: error in running command
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard