CRAN Package Check Results for Package aroma.affymetrix

Last updated on 2014-04-18 11:47:13.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.0 10.52 170.73 181.25 NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang 2.12.0 354.07 NOTE
r-devel-linux-x86_64-fedora-gcc 2.12.0 340.85 NOTE
r-devel-macosx-x86_64-clang 2.12.0 289.47 NOTE
r-devel-macosx-x86_64-gcc 2.12.0 ERROR
r-devel-windows-ix86+x86_64 2.12.0 28.00 201.00 229.00 NOTE
r-patched-linux-x86_64 2.12.0 11.10 169.98 181.08 NOTE
r-patched-solaris-sparc 2.12.0 1922.30 NOTE
r-patched-solaris-x86 2.12.0 392.30 NOTE
r-release-linux-ix86 2.12.0 21.00 233.00 254.00 NOTE
r-release-linux-x86_64 2.12.0 10.97 171.43 182.40 NOTE
r-release-macosx-x86_64 2.12.0 ERROR
r-release-windows-ix86+x86_64 2.12.0 27.00 221.00 248.00 NOTE
r-oldrel-windows-ix86+x86_64 2.12.0 29.00 201.00 230.00 NOTE

Check Details

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘dChipIO’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘affyPLM’ ‘dChipIO’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘affyPLM’
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86

Version: 2.12.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.core’
    
    Packages suggested but not available for checking:
     ‘preprocessCore’ ‘affyPLM’ ‘affy’ ‘limma’ ‘gcrma’ ‘dChipIO’ ‘Biobase’
     ‘oligo’ ‘oligoClasses’ ‘pdInfoBuilder’ ‘aroma.light’ ‘affxparser’
     ‘AffymetrixDataTestFiles’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-macosx-x86_64-gcc, r-release-macosx-x86_64

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'dChipIO' 'AffymetrixDataTestFiles'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘affyPLM’ ‘dChipIO’ ‘oligo’ ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: R code for possible problems
Result: NOTE
    extractFeatureSet.AffymetrixCelSet: no visible global function
     definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for
     ‘getPlatformDesign’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘cleanPlatformName’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘affyPLM’, ‘oligo’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘affyPLM’ ‘dChipIO’ ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
Flavor: r-patched-solaris-x86

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘affyPLM’ ‘affy’ ‘gcrma’ ‘dChipIO’ ‘oligo’ ‘oligoClasses’
     ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
Flavor: r-release-linux-ix86

Version: 2.12.0
Check: R code for possible problems
Result: NOTE
    bgAdjustRma.AffymetrixCelFile: no visible global function definition
     for ‘bg.adjust’
    extractAffyBatch.AffymetrixCelSet: no visible global function
     definition for ‘cleancdfname’
    extractExpressionSet.ChipEffectSet: no visible global function
     definition for ‘geometry’
    extractFeatureSet.AffymetrixCelSet: no visible global function
     definition for ‘read.celfiles’
    fit.CrlmmModel: no visible global function definition for ‘getM’
    getFitUnitGroupFunction.MbeiPlm : liWong: no visible global function
     definition for ‘fit.li.wong’
    pdInfo2Cdf: no visible global function definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for
     ‘getPlatformDesign’
    pdInfo2Cdf: no visible global function definition for ‘db’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘cleanPlatformName’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘geometry’
Flavor: r-release-linux-ix86

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘affy’, ‘gcrma’, ‘affyPLM’, ‘oligo’, ‘oligoClasses’
Flavor: r-release-linux-ix86