CRAN Package Check Results for Package SynergizeR

Last updated on 2014-07-31 23:47:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 1.05 14.13 15.18 NOTE
r-devel-linux-x86_64-debian-gcc 0.2 1.03 14.05 15.08 NOTE
r-devel-linux-x86_64-fedora-clang 0.2 32.50 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2 30.60 NOTE
r-devel-osx-x86_64-clang 0.2 32.57 NOTE
r-devel-windows-ix86+x86_64 0.2 5.00 27.00 32.00 NOTE
r-patched-linux-x86_64 0.2 1.09 14.20 15.29 NOTE
r-patched-solaris-sparc 0.2 212.90 NOTE
r-patched-solaris-x86 0.2 47.40 NOTE
r-release-linux-ix86 0.2 1.42 20.61 22.03 NOTE
r-release-linux-x86_64 0.2 1.17 14.79 15.96 NOTE
r-release-osx-x86_64-mavericks 0.2 NOTE
r-release-osx-x86_64-snowleopard 0.2 NOTE
r-release-windows-ix86+x86_64 0.2 4.00 35.00 39.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2 8.00 28.00 36.00 NOTE

Check Details

Version: 0.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     RCurl RJSONIO
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    File SynergizeR/R/zzz.r :
     .onLoad calls:
     packageStartupMessage("\nSynergizeR\n", appendLF = TRUE)
     packageStartupMessage("IMPORTANT: The Synergizer has been designed for bulk translation of identifiers.\nSee http://llama.mshri.on.ca/synergizer/doc/ for the details of usage. ", appendLF = TRUE)
    
    See section Good practice in '?.onAttach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: Rd line widths
Result: NOTE
    Rd file 'available_ranges.Rd':
     \usage lines wider than 90 characters:
     available_ranges(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol")
    
    Rd file 'synergizer.Rd':
     \usage lines wider than 90 characters:
     synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)
     \examples lines wider than 100 characters:
     symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at ... [TRUNCATED]
     entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc