CRAN Package Check Results for Package RSofia

Last updated on 2014-10-20 11:48:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 13.54 17.54 31.08 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 16.15 17.14 33.29 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 47.59 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 36.21 NOTE
r-devel-osx-x86_64-clang 1.1 54.76 NOTE
r-devel-windows-ix86+x86_64 1.1 60.00 38.00 98.00 NOTE
r-patched-linux-x86_64 1.1 16.21 17.85 34.06 NOTE
r-patched-solaris-sparc 1.1 372.00 NOTE
r-patched-solaris-x86 1.1 88.70 NOTE
r-release-linux-ix86 1.1 21.48 24.66 46.14 NOTE
r-release-linux-x86_64 1.1 16.40 17.55 33.95 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-osx-x86_64-snowleopard 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 49.00 52.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 53.00 49.00 102.00 NOTE

Check Details

Version: 1.1
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     libs 2.3Mb
     sofia-ml-read-only 2.7Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘methods’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    File ‘RSofia/R/zzz.R’:
     .onLoad has wrong argument list ‘pkgname, libname’
     .onLoad calls:
     require("methods", character = TRUE, quietly = TRUE)
    
    Package startup functions should have two arguments with names starting
     with ‘lib’ and ‘pkg’, respectively.
    Package startup functions should not change the search path.
    See section ‘Good practice’ in '?.onAttach'.
    
    .onLoad: warning in require("methods", character = TRUE, quietly =
     TRUE): partial argument match of ‘character’ to ‘character.only’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: Rd files
Result: NOTE
    prepare_Rd: parse_formula.Rd:23-26: Dropping empty section \seealso
    prepare_Rd: sofia.Rd:80: Dropping empty section \details
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: Rd line widths
Result: NOTE
    Rd file 'sofia.Rd':
     \usage lines wider than 90 characters:
     perceptron_margin_size = 1, training_objective = FALSE,no_bias_term = FALSE, dimensionality=150000, hash_mask_bits = 0,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: compiled code
Result: NOTE
    File ‘RSofia/libs/RSofia.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Objects: ‘sf-weight-vector.o’, ‘sofia-ml-methods.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RSofiaFacade.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.1
Check: compiled code
Result: NOTE
    File ‘RSofia/libs/RSofia.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Objects: ‘sf-weight-vector.o’, ‘sofia-ml-methods.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘RSofiaFacade.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 1.1
Check: compiled code
Result: NOTE
    File 'RSofia/libs/i386/RSofia.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'sf-weight-vector.o', 'sofia-ml-methods.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'RSofiaFacade.o'
    File 'RSofia/libs/x64/RSofia.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'sf-weight-vector.o', 'sofia-ml-methods.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'RSofiaFacade.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .gitignore
    These were most likely included in error. See section 'Package
    structure' in the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'methods' which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: 'methods'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard