CRAN Package Check Results for Package AnalyzeFMRI

Last updated on 2015-07-07 06:46:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-16 12.78 35.88 48.65 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-16 12.76 35.43 48.19 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-16 88.00 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-16 86.92 NOTE
r-devel-osx-x86_64-clang 1.1-16 83.90 NOTE
r-devel-windows-ix86+x86_64 1.1-16 51.00 134.00 185.00 NOTE
r-patched-linux-x86_64 1.1-16 12.91 35.78 48.69 NOTE
r-patched-solaris-sparc 1.1-16 649.00 NOTE
r-patched-solaris-x86 1.1-16 124.50 NOTE
r-release-linux-x86_64 1.1-16 13.41 35.76 49.16 NOTE
r-release-osx-x86_64-mavericks 1.1-16 NOTE
r-release-windows-ix86+x86_64 1.1-16 47.00 89.00 136.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-16 51.00 132.00 183.00 OK

Check Details

Version: 1.1-16
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-16
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘niftidoc’ ‘tst.hdr’ ‘tst.img’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-16
Check: R code for possible problems
Result: NOTE
    ICAspat: no visible global function definition for ‘rnorm’
    ICAtemp: no visible global function definition for ‘rnorm’
    N2G.Class.Probability: no visible global function definition for
     ‘dnorm’
    N2G.Class.Probability: no visible global function definition for
     ‘dgamma’
    N2G.Density: no visible global function definition for ‘dnorm’
    N2G.Density: no visible global function definition for ‘dgamma’
    N2G.Fit: no visible global function definition for ‘optim’
    N2G.Likelihood.Ratio: no visible global function definition for
     ‘dgamma’
    N2G.Likelihood.Ratio: no visible global function definition for ‘dnorm’
    N2G.Region : f1: no visible global function definition for ‘dnorm’
    N2G.Region : f1: no visible global function definition for ‘dgamma’
    N2G.Region : f2: no visible global function definition for ‘dnorm’
    N2G.Region : f2: no visible global function definition for ‘dgamma’
    N2G.Region: no visible global function definition for ‘optim’
    N2G.Spatial.Mixture: no visible global function definition for ‘optim’
    Sim.3D.GammaRF: no visible global function definition for ‘qgamma’
    Sim.3D.GammaRF: no visible global function definition for ‘pnorm’
    Threshold.Bonferroni: no visible global function definition for ‘qnorm’
    Threshold.Bonferroni: no visible global function definition for ‘qt’
    Threshold.Bonferroni: no visible global function definition for ‘qf’
    Threshold.FDR: no visible global function definition for ‘pnorm’
    Threshold.FDR: no visible global function definition for ‘pt’
    Threshold.FDR: no visible global function definition for ‘pf’
    Threshold.FDR: no visible global function definition for ‘qnorm’
    Threshold.FDR: no visible global function definition for ‘qt’
    Threshold.FDR: no visible global function definition for ‘qf’
    Threshold.RF: no visible global function definition for ‘optimize’
    eigenvalues: no visible global function definition for ‘par’
    eigenvalues: no visible global function definition for ‘plot’
    eigenvalues: no visible global function definition for ‘abline’
    f.ica.fmri: no visible global function definition for ‘rnorm’
    f.icast.fmri: no visible global function definition for ‘write.table’
    f.icast.fmri: no visible global function definition for ‘dev.off’
    f.plot.ica.fmri: no visible global function definition for
     ‘heat.colors’
    f.plot.ica.fmri: no visible global function definition for ‘par’
    f.plot.ica.fmri: no visible global function definition for ‘plot’
    f.plot.ica.fmri: no visible global function definition for ‘text’
    f.plot.ica.fmri: no visible global function definition for ‘image’
    f.plot.ica.fmri: no visible global function definition for ‘box’
    f.plot.ica.fmri: no visible global function definition for ‘fft’
    f.plot.ica.fmri.jpg: no visible global function definition for
     ‘heat.colors’
    f.plot.ica.fmri.jpg: no visible global function definition for ‘jpeg’
    f.plot.ica.fmri.jpg: no visible global function definition for
     ‘dev.off’
    f.spectral.summary: no visible global function definition for ‘fft’
    f.spectral.summary: no visible global function definition for ‘median’
    f.spectral.summary: no visible binding for global variable ‘quantile’
    f.spectral.summary: no visible global function definition for ‘plot’
    f.spectral.summary: no visible global function definition for ‘axis’
    f.spectral.summary: no visible global function definition for ‘points’
    f.spectral.summary.nifti: no visible global function definition for
     ‘fft’
    f.spectral.summary.nifti: no visible global function definition for
     ‘median’
    f.spectral.summary.nifti: no visible binding for global variable
     ‘quantile’
    f.spectral.summary.nifti: no visible global function definition for
     ‘plot’
    f.spectral.summary.nifti: no visible global function definition for
     ‘axis’
    f.spectral.summary.nifti: no visible global function definition for
     ‘points’
    model.2.est.gamma: no visible global function definition for ‘optimize’
    reduction: no visible binding for global variable ‘sd’
    threeDto4D: no visible global function definition for ‘glob2rx’
    Undefined global functions or variables:
     abline axis box dev.off dgamma dnorm fft glob2rx heat.colors image
     jpeg median optim optimize par pf plot pnorm points pt qf qgamma
     qnorm qt quantile rnorm sd text write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-16
Check: Rd line widths
Result: NOTE
    Rd file 'GaussSmoothArray.Rd':
     \usage lines wider than 90 characters:
     GaussSmoothArray(x, voxdim=c(1, 1, 1), ksize=5, sigma=diag(3, 3), mask=NULL, var.norm=FALSE)
    
    Rd file 'N2G.Spatial.Mixture.Rd':
     \usage lines wider than 90 characters:
     N2G.Spatial.Mixture(data, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize, ktype = c("2D", "3D"), mask = NULL)
     \examples lines wider than 100 characters:
     ans <- N2G.Spatial.Mixture(y, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize = 3, ktype = "2D", mask = m)
    
    Rd file 'SmoothEst.Rd':
     \examples lines wider than 100 characters:
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'Threshold.RF.Rd':
     \usage lines wider than 90 characters:
     Threshold.RF(p.val, sigma, voxdim = c(1, 1, 1), num.vox, type = c("Normal", "t"), df = NULL)
    
    Rd file 'analyze2nifti.Rd':
     \usage lines wider than 90 characters:
     analyze2nifti(file.in,path.in=".",path.out=".",file.out=NULL,is.nii=TRUE,qform.code=2,sform.code=2,data.type=rawToChar(raw(10)),db.name ... [TRUNCATED]
     \examples lines wider than 100 characters:
     analyze2nifti(path.in=system.file(package="AnalyzeFMRI"),file.in="example",file.out="nifti-tmp",is.nii=TRUE)
    
    Rd file 'cov.est.Rd':
     \examples lines wider than 100 characters:
     mat <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'f.complete.hdr.nifti.list.create.Rd':
     \usage lines wider than 90 characters:
     f.complete.hdr.nifti.list.create(file,dim.info=character(1),dim,intent.p1=single(1),intent.p2=single(1),intent.p3=single(1),intent.code ... [TRUNCATED]
    
    Rd file 'threeDto4D.Rd':
     \usage lines wider than 90 characters:
     threeDto4D(outputfile,path.in=NULL,prefix=NULL,regexp=NULL,times=NULL,list.of.in.files=NULL,path.out=NULL,is.nii.pair=FALSE,hdr.number= ... [TRUNCATED]
     \examples lines wider than 100 characters:
     # path.fonc <- "/network/home/lafayep/Stage/Data/map284/functional/MondrianApril2007/preprocessing/1801/smoothed/"
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64