CRAN Package Check Results for Package AnalyzeFMRI

Last updated on 2014-04-20 01:47:52.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-16 12.32 42.49 54.80 OK
r-devel-linux-x86_64-debian-gcc 1.1-16 12.70 42.34 55.04 OK
r-devel-linux-x86_64-fedora-clang 1.1-16 97.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-16 95.23 NOTE
r-devel-macosx-x86_64-clang 1.1-16 93.88 OK
r-devel-macosx-x86_64-gcc 1.1-16 OK
r-devel-windows-ix86+x86_64 1.1-16 31.00 87.00 118.00 OK
r-patched-linux-x86_64 1.1-16 12.49 43.34 55.84 OK
r-patched-solaris-sparc 1.1-16 651.60 OK
r-patched-solaris-x86 1.1-16 142.70 OK
r-release-linux-ix86 OK
r-release-linux-x86_64 1.1-16 12.71 42.21 54.92 OK
r-release-macosx-x86_64 1.1-16 OK
r-release-windows-ix86+x86_64 1.1-16 44.00 87.00 131.00 OK
r-oldrel-windows-ix86+x86_64 1.1-16 36.00 81.00 117.00 OK

Check Details

Version: 1.1-16
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘niftidoc’ ‘tst.hdr’ ‘tst.img’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-16
Check: Rd line widths
Result: NOTE
    Rd file 'GaussSmoothArray.Rd':
     \usage lines wider than 90 characters:
     GaussSmoothArray(x, voxdim=c(1, 1, 1), ksize=5, sigma=diag(3, 3), mask=NULL, var.norm=FALSE)
    
    Rd file 'N2G.Spatial.Mixture.Rd':
     \usage lines wider than 90 characters:
     N2G.Spatial.Mixture(data, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize, ktype = c("2D", "3D"), mask = NULL)
     \examples lines wider than 100 characters:
     ans <- N2G.Spatial.Mixture(y, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize = 3, ktype = "2D", mask = m)
    
    Rd file 'SmoothEst.Rd':
     \examples lines wider than 100 characters:
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'Threshold.RF.Rd':
     \usage lines wider than 90 characters:
     Threshold.RF(p.val, sigma, voxdim = c(1, 1, 1), num.vox, type = c("Normal", "t"), df = NULL)
    
    Rd file 'analyze2nifti.Rd':
     \usage lines wider than 90 characters:
     analyze2nifti(file.in,path.in=".",path.out=".",file.out=NULL,is.nii=TRUE,qform.code=2,sform.code=2,data.type=rawToChar(raw(10)),db.name ... [TRUNCATED]
     \examples lines wider than 100 characters:
     analyze2nifti(path.in=system.file(package="AnalyzeFMRI"),file.in="example",file.out="nifti-tmp",is.nii=TRUE)
    
    Rd file 'cov.est.Rd':
     \examples lines wider than 100 characters:
     mat <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'f.complete.hdr.nifti.list.create.Rd':
     \usage lines wider than 90 characters:
     f.complete.hdr.nifti.list.create(file,dim.info=character(1),dim,intent.p1=single(1),intent.p2=single(1),intent.p3=single(1),intent.code ... [TRUNCATED]
    
    Rd file 'threeDto4D.Rd':
     \usage lines wider than 90 characters:
     threeDto4D(outputfile,path.in=NULL,prefix=NULL,regexp=NULL,times=NULL,list.of.in.files=NULL,path.out=NULL,is.nii.pair=FALSE,hdr.number= ... [TRUNCATED]
     \examples lines wider than 100 characters:
     # path.fonc <- "/network/home/lafayep/Stage/Data/map284/functional/MondrianApril2007/preprocessing/1801/smoothed/"
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc