CRAN Package Check Results for Package Agreement

Last updated on 2015-07-07 06:46:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8-1 0.93 19.90 20.83 NOTE
r-devel-linux-x86_64-debian-gcc 0.8-1 0.64 19.20 19.84 NOTE
r-devel-linux-x86_64-fedora-clang 0.8-1 37.42 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8-1 35.63 NOTE
r-devel-osx-x86_64-clang 0.8-1 39.38 NOTE
r-devel-windows-ix86+x86_64 0.8-1 5.00 32.00 37.00 NOTE
r-patched-linux-x86_64 0.8-1 0.66 19.92 20.58 NOTE
r-patched-solaris-sparc 0.8-1 262.90 NOTE
r-patched-solaris-x86 0.8-1 48.80 NOTE
r-release-linux-x86_64 0.8-1 0.66 19.60 20.27 NOTE
r-release-osx-x86_64-mavericks 0.8-1 OK
r-release-windows-ix86+x86_64 0.8-1 5.00 31.00 36.00 OK
r-oldrel-windows-ix86+x86_64 0.8-1 5.00 37.00 42.00 OK

Check Details

Version: 0.8-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.report summary.agreement summary.report summary.tir_iir
     summary.unified_agreement
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.8-1
Check: R code for possible problems
Result: NOTE
    IIR: no visible global function definition for ‘qnorm’
    TIR: no visible global function definition for ‘qnorm’
    agreement: no visible global function definition for ‘var’
    agreement: no visible global function definition for ‘pchisq’
    agreement: no visible global function definition for ‘dnorm’
    agreement: no visible global function definition for ‘qnorm’
    html.report: no visible global function definition for ‘plot’
    plot.report: no visible global function definition for ‘plot’
    plot.report: no visible global function definition for ‘axis’
    plot.report: no visible global function definition for ‘points’
    unified.agreement: no visible global function definition for ‘lm’
    unified.agreement: no visible global function definition for ‘qnorm’
    unified.agreement: no visible global function definition for ‘pnorm’
    Undefined global functions or variables:
     axis dnorm lm pchisq plot pnorm points qnorm var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.8-1
Check: Rd line widths
Result: NOTE
    Rd file 'DCLHb.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'TIR_IIR.Rd':
     \usage lines wider than 90 characters:
     TIR_IIR(dataset, var, k, m, TIR_test, TIR_ref, IIR_test, IIR_ref, error = "const", alpha = 0.05, TIR_a)
     \examples lines wider than 100 characters:
     TI <- TIR_IIR(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, TIR_test="1,2", TIR_ref="All", IIR_test="1", IIR ... [TRUNCATED]
    
    Rd file 'agreement.Rd':
     \usage lines wider than 90 characters:
     agreement(x, y, error, target, CCC_a = 0.95, TDI_a, alpha = 0.05, CP_a = 0.9, H_label = "x", V_label = "y", min = NA, max = NA, by = NA ... [TRUNCATED]
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'html.unified_agreement.Rd':
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    Rd file 'plot.report.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'summary.report.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'summary.tir_iir.Rd':
     \examples lines wider than 100 characters:
     TI <- TIR_IIR(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, TIR_test="1,2", TIR_ref="All", IIR_test="1", IIR ... [TRUNCATED]
    
    Rd file 'summary.unified_agreement.Rd':
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    Rd file 'unified.agreement.Rd':
     \usage lines wider than 90 characters:
     unified.agreement(dataset, var = NA, k, m, CCC_a = 0.9775, CCC_a_intra = 0.995, CCC_a_inter = 0.9775, CCC_a_total = 0.9775, CP_a = 0.9, ... [TRUNCATED]
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64