* using log directory 'd:/Rcompile/CRANpkg/local/2.9/ComPairWise.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* checking for file 'ComPairWise/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ComPairWise' version '1.01'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ComPairWise' can be installed ... WARNING
Found the following significant warnings:
  Warning: unmatched right brace in file 'endpoints.Rd' on line 18
  Warning: unmatched right brace in file 'endpoints.Rd' on line 18
See 'd:/Rcompile/CRANpkg/local/2.9/ComPairWise.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cpw: no visible binding for '<<-' assignment to 'filenames'
Found possibly global 'T' or 'F' in the following functions:
  check.format cpw dots.to.bases read.nexus read.phylip
* checking Rd files ... OK
* checking Rd files against version 2 parser ... WARNING
*** error on file ./man/ComPairWise-package.Rd
Error : ./man/ComPairWise-package.Rd:21: Unrecognized macro \item

*** error on file ./man/cpw.Rd
Error : ./man/cpw.Rd:37: Unrecognized macro \item

*** error on file ./man/endpoints.Rd
Error in parse_Rd("./man/endpoints.Rd", encoding = "unknown") : 
  ./man/endpoints.Rd:18:1: unexpected '}'
17: \author{TER}
18: }
    ^

problems found in 'ComPairWise-package.Rd', 'cpw.Rd', 'endpoints.Rd'
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK