* using log directory 'd:/Rcompile/CRANpkg/local/2.7/BMA.Rcheck'
* using R version 2.7.2 RC (2008-08-18 r46382)
* using session charset: ISO8859-1
* checking for file 'BMA/DESCRIPTION' ... OK
* this is package 'BMA' version '3.03'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BMA' can be installed ... WARNING
Found the following significant warnings:
  Warning: Extension: REAL array index at (1)
  Warning: Extension: REAL array index at (1)
See 'd:/Rcompile/CRANpkg/local/2.7/BMA.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bicreg: no visible binding for global variable 'w'
glib.bic.glm: no visible binding for global variable 'NUL'
iBMA.glm.data.frame : sortX: no visible binding for '<<-' assignment to
  'nastyHack_____glm.family'
iBMA.glm.data.frame : sortX: no visible binding for '<<-' assignment to
  'nastyHack_____x.df'
iBMA.glm.data.frame : sortX: no visible binding for global variable
  'nastyHack_____glm.family'
iBMA.glm.data.frame : sortX: no visible binding for global variable
  'nastyHack_____x.df'
iBMA.glm.matrix : sortX: no visible binding for '<<-' assignment to
  'nastyHack_____glm.family'
iBMA.glm.matrix : sortX: no visible binding for '<<-' assignment to
  'nastyHack_____x.df'
iBMA.glm.matrix : sortX: no visible binding for global variable
  'nastyHack_____glm.family'
iBMA.glm.matrix : sortX: no visible binding for global variable
  'nastyHack_____x.df'
iBMA.surv.data.frame : sortX: no visible binding for '<<-' assignment
  to 'nastyHack_____x.df'
iBMA.surv.data.frame : sortX: no visible binding for global variable
  'nastyHack_____x.df'
iBMA.surv.matrix : sortX: no visible binding for '<<-' assignment to
  'nastyHack_____x.df'
iBMA.surv.matrix : sortX: no visible binding for global variable
  'nastyHack_____x.df'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Functions/methods with usage in documentation object 'as.data.frame.mc3' but not in code:
  [

* checking Rd \usage sections ... WARNING
Objects in \usage without \alias in documentation object 'as.data.frame.mc3':
  [

Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
S3 methods shown with full name in documentation object 'as.data.frame.mc3':
  as.data.frame.mc3

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BMA-Ex.R ... OK
* checking examples ... OK
* creating BMA-manual.tex ... OK
* checking BMA-manual.tex using pdflatex ... OK