* using log directory 'd:/Rcompile/CRANpkg/local/2.15/cem.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'cem/DESCRIPTION' ... OK
* this is package 'cem' version '1.0.142'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'cem' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'cem/R/zzz.R':
  .onLoad calls:
    cat("\nHow to use CEM? Type vignette(\"cem\")\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

cemspace: warning in cem(treatment, data, cut = newcut, eval = FALSE):
  partial argument match of 'cut' to 'cutpoints'
cemspace: warning in cem(treatment, data, cut = newcut, eval = FALSE):
  partial argument match of 'eval' to 'eval.imbalance'
imbspace.plot : OnOK: warning in cem(obj$match$treatment, data = data[,
  c(obj$match$vars, obj$match$treatment)], cut = new.br, eval = FALSE):
  partial argument match of 'cut' to 'cutpoints'
imbspace.plot : OnOK: warning in cem(obj$match$treatment, data = data[,
  c(obj$match$vars, obj$match$treatment)], cut = new.br, eval = FALSE):
  partial argument match of 'eval' to 'eval.imbalance'
plot.cem.att: warning in factor(level, levels = c("negative", "zero",
  "positive"), ord = TRUE): partial argument match of 'ord' to
  'ordered'
shift.cem: warning in cem.main(treatment = obj$treatment, data = data,
  drop = obj$drop, cut = new.br, k2k = obj$k2k): partial argument match
  of 'cut' to 'cutpoints'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking for left-overs from vignette generation ... WARNING
  file 'inst/doc/Rplots.pdf' will not be installed: please remove it
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files look like leftovers/mistakes:
  'copyRd.Rout'
Please remove them from your package.
The following files should probably not be installed:
  'JSS-paper.tex', 'Makefile', 'resprev.tex', 'upquote.sty'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:

  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x64' ... WARNING
Found the following significant warnings:

  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
  Warning: 'parallel' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... NOTE
Error in re-building vignettes:
  ...
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
Warning in min(x, na.rm = TRUE) :
  no non-missing arguments to min; returning Inf
make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/2.15/cem.Rcheck/vign_test/cem/inst/doc'
/bin/sh ./makeDocs rbuild
make[1]: /bin/sh: Command not found
make[1]: *** [all] Error 127
make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.15/cem.Rcheck/vign_test/cem/inst/doc'
Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.15/cem.Rcheck/vign_test/cem") : 
  running 'make' failed
Execution halted

* checking PDF version of manual ... OK
WARNING: There were 3 warnings.
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/cem.Rcheck/00check.log'
for details.