* using log directory 'd:/Rcompile/CRANpkg/local/2.10/PHYLOGR.Rcheck'
* using R version 2.10.0 RC (2009-10-20 r50178)
* using session charset: ISO8859-1
* checking for file 'PHYLOGR/DESCRIPTION' ... OK
* this is package 'PHYLOGR' version '1.0.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PHYLOGR' can be installed ... WARNING
Found the following significant warnings:
  Warning: ./man/Lacertid.IC.Rd:22: unexpected '}'
  Warning: ./man/Lacertid.Original.Rd:28: unexpected '}'
  Warning: ./man/Lacertid.varcov.Rd:20: unexpected '}'
  Warning: ./man/SimulExample.Rd:10: unexpected '}'
  Warning: ./man/SimulExample.Rd:34: unexpected '}'
  Warning: bad markup (extra space?) at print.summary.phylog.Rd:19:11
  Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
  Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
See 'd:/Rcompile/CRANpkg/local/2.10/PHYLOGR.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lm.phylog: no visible binding for global variable 'sim.counter'
* checking Rd files ... WARNING
prepare_Rd: Helper.functions.Rd:23-24: Dropping empty section \usage
prepare_Rd: Helper.functions.Rd:25-26: Dropping empty section \arguments
prepare_Rd: Lacertid.IC.Rd:22: unexpected '}'
prepare_Rd: Lacertid.Original.Rd:28: unexpected '}'
prepare_Rd: Lacertid.varcov.Rd:20: unexpected '}'
prepare_Rd: SimulExample.Rd:10: unexpected '}'
prepare_Rd: SimulExample.Rd:34: unexpected '}'
prepare_Rd: bad markup (extra space?) at print.summary.phylog.Rd:19:11
prepare_Rd: print.summary.phylog.Rd:50-51: Dropping empty section \examples
prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK